Monday, 04 February 2013 at 3:18 pm

For phd students currently writing their thesis/dissertation, try out sharelatex.com. It automatically saves and allows you to compile on the fly and view the resulting .pdf. Here is a pretty standard latex template for any report type document:

\documentclass{report}
\usepackage[utf8]{inputenc}
\usepackage{natbib}
\usepackage{graphicx}
\title{my thesis}
\author{my name}
\date{my date}
\setcounter{secnumdepth}{5}
\begin{document}
\tableofcontents
\chapter{Introduction}
\section{Organism X biology}
\subsection{Life cycle}
\subsubsection{Phase 1}
My text content
\subsubsection{Phase 2} 
My text content  \section{Organism X bioinformatics}
\subsection{Available Data}
\subsubsection{Genome}
My text content
\subsubsection{Transcriptome} 
My text content  
\chapter{Organism X genome assembly}
\section{Section}
\chapter{Conclusion}
\section{Section}

\bibliographystyle{plain}
\bibliography{references}

\end{document}







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